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Teaching / MAS8402

Statistical Bioinformatics and Stochastic Systems Biology

This page provides on-line material for MAS8402, which is concerned with biological sequence analysis and stochastic modelling and simulation of genetic and biochemical networks.

• Module description
• Programme information
• Module plan and timetable
• Teaching materials:
• Lecture notes on stochastic systems biology (Newcastle access only)
• Lecture notes on sequence analysis (Newcastle access only)
• Computer practicals
• Books:
• Stochastic modelling for systems biology (Wilkinson) - main course text - it would be really very useful to have access to a copy of this book
• Computational modelling of genetic and biochemical networks (Bower and Bolouri)
• Foundations of systems biology (Kitano)
• Biological sequence analysis: Probabilistic models of proteins and nucleic acids (Durbin, Eddy, Krogh, Mitchison)
• Markov processes: an introduction for physical scientists (Gillespie)
• Stochastic processes (Ross)
• Elements of simulation (Morgan)
• Programming in R:
• R project website
• Quick intro to R and Bioconductor
• SMfSB R package