LINKS

Home Page

Newcastle University (internal)

ICaMB

Suppliers

Mol Biol and Bioinformatics Resources

Ian Cowell, Institute for Cell and Molecular Biosciences

Newcastle University

E-mail i.g.cowell@ncl.ac.uk

 

 

Alignments and Similarity Searches

BLAST Search at NIH
BLAST search at EBI
FASTA search form
Clustal at EBI
BoxShade - To colour-in Clustal alignments
BCM Search Launcher
 

 DNA sequence Analysis

Sequence manipulation suite Web Cutter – Restriction digests Translate Tool at ExPASy Transeq translation tool at EBI Repeat Masker.org Repeat Masker (@EMBL) NEB technical reference

Protein Analysis

Molecules R Us - PDB viewer PSORT - Cellular sorting signal finder PHOSPHOBASE PROSITE at EBI OWL - protein sequence database Calculate pI & Mr of a protein at ExPASy SWISS MODEL

Other MolBiol / Bioinformatics Resources

Ensembl Genome Browser UCSC Genome Browser NIH Research Tools Pedro’s Molecular Biology Research Tools Hinxton Hall - EBI EBI online applications Expasy Mol. Biol. Server TIGR Gene Indices

Genetics and Genomics

Entrez Gene Sanger Center S.pombe project Sanger Centre HGP Genemap 99 NCBI Mouse Human Homology Relationships NCBI Genomes Browser FANTOM Database

Zebrafish genomics links

WU Zebrafish EST Database NCBI Zebrafish Genome Resources TIGR Zebrafish Gene Index

Selected Publications

12. Willmore, E., Elliott, S.L., Mainou-Fowler, T., Summerfield, G.P., Jackson, G.H., O'Neill, F., Lowe, C., Carter, A., Harris, R., Pettitt, A.R.,Cano-Soumillac, C.,Griffin, R. J., Cowell, I. G., Austin, C. A. and Durkacz, B. W. (2008). DNA-dependent protein kinase is a therapeutic target and an indicator of poor prognosis in B-cell chronic lymphocytic leukemia. Clin Cancer Res 14, 3984-3992.

11. Toyoda, E., Kagaya, S., Cowell, I.G., Kurosawa, A., Kamoshita, K., Nishikawa, K., Iiizumi, S., Koyama, H., Austin, C.A., and Adachi, N. (2008). NK314, a topoisomerase II inhibitor that specifically targets the alpha isoform. J Biol Chem 283, 23711-23720.

10. Cowell, I.G., Sunter, N.J., Singh, P.B., Austin, C.A., Durkacz, B.W., and Tilby, M.J. (2007). gammaH2AX foci form preferentially in euchromatin after Ionising-radiation. PLoS ONE 2, e1057.

9. Leontiou, C., Watters, G.P., Gilroy, K.L., Heslop, P., Cowell, I.G., Craig, K., Lightowlers, R.N., Lakey, J.H., and Austin, C.A. (2007). Differential selection of acridine resistance mutations in human DNA topoisomerase IIbeta is dependent on the acridine structure. Mol Pharmacol 71, 1006-1014.

8. Zhao, Y., Thomas, H.D., Batey, M.A., Cowell, I.G., Richardson, C.J., Griffin, R.J., Calvert, H.A., Newell, D.R., Smith, G.C.M., and Curtin, N.J. (2006). Preclinical evaluation of a potent novel DNA-dependent protein kinase (DNA-PK) inhibitor, NU7441. Cancer Res 66, 5354-5362.

7. Cowell, I.G., Durkacz, B.W., and Tilby, M.J. (2005). Sensitization of breast carcinoma cells to ionizing radiation by small molecule inhibitors of DNA-dependent protein kinase and ataxia telangiectsia mutated. Biochem Pharmacol 71, 13-20.

6. Brown, J.P., Singh, P.B., and Cowell, I.G. (2003). Composite cis-acting epigenetic switches in eukaryotes: lessons from Drosophila Fab-7 for the Igf2-H19 imprinted domain. Genetica 117, 199-207.

5. Cowell, I.G., Aucott, R., Mahadevaiah, S.K., Burgoyne, P.S., Huskisson, N., Bongiorni, S., Prantera, G., Fanti, L., Pimpinelli, S., Wu, R., et al. (2002). Heterochromatin, HP1 and methylation at lysine 9 of histone H3 in animals. Chromosoma 111, 22-36.

4. Filesi, I., Cardinale, A., van Der, S.S., Cowell, I.G., Singh, P.B., and Biocca, S. (2002). Loss of Heterochromatin Protein 1 (HP1) chromodomain function in mammalian cells by intracellular antibodies causes cell death. J. Cell Sci. 115, 1803-1813.

3. Scholzen, T., Endl, E., Wohlenberg, C., van Der, S.S., Cowell, I.G., Gerdes, J., and Singh, P.B. (2002). The Ki-67 protein interacts with members of the heterochromatin protein 1 (HP1) family: a potential role in the regulation of higher-order chromatin structure. J. Pathol. 196, 135-144.

2.Wang, G., Ma, A., Chow, C.M., Horsley, D., Brown, N.R., Cowell, I.G., and Singh, P.B. (2000). Conservation of heterochromatin protein 1 function. Mol Cell Biol 20, 6970-6983.